bluecellulab.synapse.synapse_types¶

Class that represents a synapse in bluecellulab.

Classes

`AmpanmdaSynapse`(gid, hoc_args, syn_id, ...)
`GabaabSynapse`(gid, hoc_args, syn_id, ...[, ...])
`GluSynapse`(gid, hoc_args, syn_id, ...)
`Synapse`(cell_id, hoc_args, syn_id, ...[, ...])	Class that represents a synapse in bluecellulab.
`SynapseHocArgs`(location, section)	Parameters required by synapse hoc constructor.
`SynapseID`(projection, sid)	Class that represents a synapse id in bluecellulab.

class bluecellulab.synapse.synapse_types.AmpanmdaSynapse(gid, hoc_args, syn_id, syn_description, popids, post_gid, extracellular_calcium)[source]¶

property info_dict¶: Convert the synapse info to a dict from which it can be reconstructed.

use_ampanmda_helper()[source]¶

Python implementation of the AMPANMDA helper.

This helper object will encapsulate the hoc actions needed to create our typical excitatory synapse.

Return type:: None

class bluecellulab.synapse.synapse_types.GabaabSynapse(gid, hoc_args, syn_id, syn_description, popids, post_gid, extracellular_calcium, randomize_risetime=True)[source]¶

property info_dict¶: Convert the synapse info to a dict from which it can be reconstructed.

use_gabaab_helper(randomize_gaba_risetime)[source]¶

Python implementation of the GABAAB helper.

This helper object will encapsulate the hoc actions: needed to create our typical inhibitory synapse.

Parameters:

randomize_gaba_risetime (bool) – if True then RNG code runs
value. (to set tau_r_GABAA)

Raises:

ValueError – raised when the RNG mode is unknown.

Return type:

None

class bluecellulab.synapse.synapse_types.GluSynapse(gid, hoc_args, syn_id, syn_description, popids, post_gid, extracellular_calcium)[source]¶

property info_dict¶: Convert the synapse info to a dict from which it can be reconstructed.

use_glusynapse_helper()[source]¶

Python implementation of the GluSynapse helper.

This helper object will encapsulate the hoc actions needed to create our plastic excitatory synapse.

Return type:: None

class bluecellulab.synapse.synapse_types.Synapse(cell_id, hoc_args, syn_id, syn_description, popids, post_gid, extracellular_calcium=None)[source]¶

Class that represents a synapse in bluecellulab.

Parameters:

cell_id (CellId)
hoc_args (SynapseHocArgs)
syn_id (tuple[str, int])
syn_description (Series)
popids (tuple[int, int])
post_gid (int | None)
extracellular_calcium (float | None)

apply_hoc_configuration(hoc_configure_params)[source]¶

Apply the list of hoc configuration commands to the synapse.

Parameters:: hoc_configure_params (list[str])
Return type:: None

property delay_weights: list[tuple[float, float]]¶: Adjustments to synapse delay and weight.

delete()[source]¶

Delete the NEURON objects of the connection.

Return type:: None

property info_dict: dict[str, Any]¶: Convert the synapse info to a dict from which it can be reconstructed.

update_syn_description(syn_description)[source]¶

Change data types, compute more columns needed by the simulator.

Parameters:: syn_description (Series)
Return type:: Series

property weight: float | None¶: The last overridden synapse weight.

class bluecellulab.synapse.synapse_types.SynapseHocArgs(location: float, section: NeuronSection)[source]¶

Parameters required by synapse hoc constructor.

location: float¶: Alias for field number 0

section: HocObject¶: Alias for field number 1

class bluecellulab.synapse.synapse_types.SynapseID(projection: str, sid: int)[source]¶

Class that represents a synapse id in bluecellulab.

projection: str¶: Alias for field number 0

sid: int¶: Alias for field number 1